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"min": 0.0,
"max": 1.0,
"default": 0.5},
"out_file": {
"type": "string",
"default": "output.csv"}}
output_filename = params["out_file"]["default"]
output_columns = ["f"]
# Create an encoder, decoder and collation element
encoder = uq.encoders.GenericEncoder(
template_fname=HOME + '/sc/sobol.template',
delimiter='$',
target_filename='poly_in.json')
decoder = uq.decoders.SimpleCSV(target_filename=output_filename,
output_columns=output_columns,
header=0)
collater = uq.collate.AggregateSamples(average=False)
# Add the SC app (automatically set as current app)
my_campaign.add_app(name="sc",
params=params,
encoder=encoder,
decoder=decoder,
collater=collater)
# Create the sampler
vary = {
"x1": cp.Uniform(0.0, 1.0),
"x2": cp.Uniform(0.0, 1.0)}
"type": "float",
"min": 0.0001,
"max": 1000.0,
"default": 1.0},
"velocity": {
"type": "float",
"min": 0.0,
"max": 1000.0,
"default": 10.0}}
# Create an encoder, decoder and collater for the cannonsim app
encoder = uq.encoders.GenericEncoder(
template_fname='tests/cannonsim/test_input/cannonsim.template',
delimiter='#',
target_filename='in.cannon')
decoder = uq.decoders.SimpleCSV(
target_filename='output.csv', output_columns=[
'Dist', 'lastvx', 'lastvy'], header=0)
collater = uq.collate.AggregateSamples(average=False)
# Add the cannonsim app
my_campaign.add_app(name="cannonsim",
params=params,
encoder=encoder,
decoder=decoder,
collater=collater)
# Set the active app to be cannonsim (this is redundant when only one app
# has been added)
my_campaign.set_app("cannonsim")
# Set up samplers
"type": "float",
"min": 0.0001,
"max": 1000.0,
"default": 1.0},
"velocity": {
"type": "float",
"min": 0.0,
"max": 1000.0,
"default": 10.0}}
# Create an encoder and decoder for the cannonsim app
encoder = uq.encoders.GenericEncoder(
template_fname='tests/cannonsim/test_input/cannonsim.template',
delimiter='#',
target_filename='in.cannon')
decoder = uq.decoders.SimpleCSV(
target_filename='output.csv', output_columns=[
'Dist', 'lastvx', 'lastvy'], header=0)
# Add the cannonsim app
my_campaign.add_app(name="cannonsim",
params=params,
encoder=encoder,
decoder=decoder)
# Set the active app to be cannonsim (this is redundant when only one app
# has been added)
my_campaign.set_app("cannonsim")
# Create a collation element for this campaign
collater = uq.collate.AggregateSamples(average=False)
my_campaign.set_collater(collater)
"min": 0.0,
"max": 40.0,
"default": 15.0},
"out_file": {
"type": "string",
"default": "output.csv"}}
output_filename = params["out_file"]["default"]
output_columns = ["te", "ti"]
# Create an encoder and decoder for QMC test app
encoder = uq.encoders.GenericEncoder(
template_fname='tests/cooling/cooling.template',
delimiter='$',
target_filename='cooling_in.json')
decoder = uq.decoders.SimpleCSV(target_filename=output_filename,
output_columns=output_columns,
header=0)
# Add the PC app (automatically set as current app)
my_campaign.add_app(name="qmc",
params=params,
encoder=encoder,
decoder=decoder
)
# Create a collation element for this campaign
collater = uq.collate.AggregateSamples(average=False)
my_campaign.set_collater(collater)
# Create the sampler
vary = {
for i in range(10):
params["x%d" % (i + 1)] = {"type": "float",
"min": 0.0,
"max": 1.0,
"default": 0.5}
params["out_file"] = {"type": "string", "default": "output.csv"}
output_filename = params["out_file"]["default"]
output_columns = ["f"]
# Create an encoder, decoder and collation element
encoder = uq.encoders.GenericEncoder(
template_fname='tests/sc/poly_model_anisotropic.template',
delimiter='$',
target_filename='poly_in.json')
decoder = uq.decoders.SimpleCSV(target_filename=output_filename,
output_columns=output_columns,
header=0)
collater = uq.collate.AggregateSamples(average=False)
# Add the SC app (automatically set as current app)
my_campaign.add_app(name="sc",
params=params,
encoder=encoder,
decoder=decoder,
collater=collater)
# Create the sampler
vary = {}
for i in range(d):
vary["x%d" % (i + 1)] = cp.Uniform(0, 1)
"min": 0.0,
"max": 1.0,
"default": 0.5},
"out_file": {
"type": "string",
"default": "output.csv"}}
output_filename = params["out_file"]["default"]
output_columns = ["f"]
# Create an encoder, decoder and collation element
encoder = uq.encoders.GenericEncoder(
template_fname=HOME + '/sobol.template',
delimiter='$',
target_filename='sobol_in.json')
decoder = uq.decoders.SimpleCSV(target_filename=output_filename,
output_columns=output_columns,
header=0)
collater = uq.collate.AggregateSamples(average=False)
# Add the SC app (automatically set as current app)
my_campaign.add_app(name="sc",
params=params,
encoder=encoder,
decoder=decoder,
collater=collater)
# Create the sampler
vary = {
"x1": cp.Uniform(0.0, 1.0),
"x2": cp.Uniform(0.0, 1.0),
"x3": cp.Uniform(0.0, 1.0),
"default": 10
},
"out_file": {
"type": "string",
"default": "output.csv"
},
}
vary = {
"mu": cp.Uniform(1.0, 100.0),
}
encoder = uq.encoders.GenericEncoder(template_fname='tests/gauss/gauss.template',
target_filename='gauss_in.json')
#decoder = JSONDecoder(target_filename='output.csv.json', output_columns=['numbers'])
decoder = uq.decoders.SimpleCSV(target_filename="output.csv",
output_columns=["numbers"],
header=0)
collater = uq.collate.AggregateSamples(average=False)
actions = uq.actions.ExecuteLocal("tests/gauss/gauss_json.py gauss_in.json")
sampler = uq.sampling.PCESampler(vary=vary, polynomial_order=4)
my_campaign = uq.Campaign(name='gauss_vector', work_dir=tmpdir)
my_campaign.add_app(name="gauss_vector",
params=params,
encoder=encoder,
decoder=decoder,
collater=collater)
my_campaign.set_sampler(sampler)
my_campaign.draw_samples()
my_campaign.populate_runs_dir()
my_campaign.apply_for_each_run_dir(actions)
my_campaign.collate()
"t_env": {
"type": "float",
"min": 0.0,
"max": 40.0,
"default": 15.0},
"out_file": {
"type": "string",
"default": "output.csv"}}
output_filename = params["out_file"]["default"]
output_columns = ["te", "ti"]
encoder = uq.encoders.GenericEncoder(
template_fname='tests/cooling/cooling.template',
delimiter='$',
target_filename='cooling_in.json')
decoder = uq.decoders.SimpleCSV(target_filename=output_filename,
output_columns=output_columns,
header=0)
collater = uq.collate.AggregateSamples(average=False)
vary = {
"kappa": cp.Uniform(0.025, 0.075),
"t_env": cp.Uniform(15, 25)
}
cooling_sampler = uq.sampling.PCESampler(vary=vary, polynomial_order=3)
cooling_action = uq.actions.ExecuteLocal("tests/cooling/cooling_model.py cooling_in.json")
cooling_stats = uq.analysis.PCEAnalysis(sampler=cooling_sampler, qoi_cols=output_columns)
return params, encoder, decoder, collater, cooling_sampler, cooling_action, cooling_stats
"min": 0.0001,
"max": 1000.0,
"default": 1.0},
"velocity": {
"type": "float",
"min": 0.0,
"max": 1000.0,
"default": 10.0}}
# Create an encoder and decoder for the cannonsim app
encoder = uq.encoders.GenericEncoder(
template_fname='tests/cannonsim/test_input/cannonsim.template',
delimiter='#',
target_filename='in.cannon')
output_cols = ['Dist', 'lastvx', 'lastvy']
decoder = uq.decoders.SimpleCSV(
target_filename='output.csv', output_columns=output_cols, header=0)
# Create a collation element for this campaign
collater = uq.collate.AggregateByVariables(average=False)
# Make a random sampler
sweep = {
"angle": [0.1, 0.2, 0.3],
"height": [2.0, 10.0],
"velocity": [10.0, 10.1, 10.2]
}
sampler = uq.sampling.BasicSweep(sweep=sweep)
my_campaign = uq.Campaign(name='aggregate_by_var', work_dir=tmpdir, db_location='sqlite:///')
my_campaign.add_app(name="cannon_test",
params=params,
encoder=encoder,
decoder=decoder,
for k in params.keys():
if first:
str += '{"%s": "$%s"' % (k,k) ; first = False
else:
str += ', "%s": "$%s"' % (k,k)
str += '}'
print(str, file=open('fusion.template','w'))
"""
# Create an encoder, decoder and collater for PCE test app
encoder = uq.encoders.GenericEncoder(template_fname='fusion.template',
delimiter='$',
target_filename='fusion_in.json')
decoder = uq.decoders.SimpleCSV(target_filename="output.csv",
output_columns=["te", "ne", "rho", "rho_norm"],
header=0)
collater = uq.collate.AggregateSamples(average=False)
# Add the app (automatically set as current app)
my_campaign.add_app(name="fusion",
params=params,
encoder=encoder,
decoder=decoder,
collater=collater)
time_end = time.time()
print('Time for phase 1 = %.3f' % (time_end-time_start))
time_start = time.time()