Package Health Score

62 / 100

security
No known security issues
popularity
Limited
maintenance
Inactive
community
Active

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Popularity

Limited

GitHub Stars: 123
Forks: 29
Contributors: 40

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package oakx-grape, we found that it has been starred 123 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Nov 22, 2022
Direct Vulnerabilities: 0
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0
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0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
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All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

Apache-2.0

Security Policy

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Maintenance

Inactive

Commit Frequency

Open Issues: 153
Open PR: 9
Last Release: 2 years ago
Last Commit: 1 month ago

Further analysis of the maintenance status of oakx-grape based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Inactive.

An important project maintenance signal to consider for oakx-grape is that it hasn't seen any new versions released to PyPI in the past 12 months, and could be considered as a discontinued project, or that which receives low attention from its maintainers.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Active

Readme: Yes
Contributing.md: Yes
Code of Conduct: Yes
Contributors: 40
Funding: No

With more than 10 contributors for the oakx-grape repository, this is possibly a sign for a growing and inviting community.

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Package

Python Versions Compatibility: >=3.9,<3.12

Age: 2 years
Latest Release: 2 years ago
Dependencies: 8 Direct
Versions: 3
Maintainers: 3
Wheels: OS Independent

Readme

oakx-grape

🌳 🍇 Grape wrapper for OAK 🌳 🍇

ALPHA

Usage

Macbook users with M1 processor need to do a few extra steps as follows:

Download Anaconda.
conda create --name oakx-grape-env python=3.9
conda activate oakx-grape-env
pip install poetry
poetry install

The steps below are common to everyone.

pip install oakx-grape
poetry run runoak -i grape:sqlite:obo:pato relationships --direction both shape

Install NVM + NPM

These instructions help setup nvm and npm on one's system.

Install GraphViz and OboGraphViz

brew install graphviz
npm install -g obographviz

How it works

This plugin implements a grape wrapper. The wrapper in fact wraps two adapters:

An adaptor to ensmallen/grape, for performing performance-intensive graph operations
An OAK adapter for handling everything else, including lookup by labels, search, predicate filtering, etc

There are two choices of selector:

grape:kgobo:{go,pato,uberon,...}
grape:OAK-SELECTOR

with the first pattern, the grape graph is loaded from kgobo, and the oak adapter is loaded from semantic sql

with the second, you can most existing existing OAK adapters:

sqlite/semsql
obo
rdf/owl

Note you CANNOT use a backend like ubegraph or bioportal that relies on API calls

The idea is we will be able to run a notebook like this:

https://github.com/INCATools/ontology-access-kit/blob/main/notebooks/Monarch/PhenIO-Tutorial.ipynb

With the semsim part handled by OAK

Acknowledgements

This cookiecutter project was developed from the oakx-plugin-cookiecutter template and will be kept up-to-date using cruft.

oakx-grape dependencies

bioregistry click ensmallen grape importlib oaklib scipy tox

FAQs

What is oakx-grape?

oakx-grape. Visit Snyk Advisor to see a full health score report for oakx-grape, including popularity, security, maintenance & community analysis.

Is oakx-grape popular?

The python package oakx-grape receives a total of 45 weekly downloads. As such, oakx-grape popularity was classified as limited. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is oakx-grape well maintained?

We found indications that oakx-grape is an Inactive project. See the full package health analysis to learn more about the package maintenance status.

Is oakx-grape safe to use?

The python package oakx-grape was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 21 November-2024, at 17:25 (UTC).

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Package

Readme

oakx-grape

Usage

Install NVM + NPM

Install GraphViz and OboGraphViz

How it works

Acknowledgements

oakx-grape dependencies

FAQs

What is oakx-grape?

Is oakx-grape popular?

Is oakx-grape well maintained?

Is oakx-grape safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Explore Similar Packages

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

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Snyk Vulnerability Scanner

Readme

oakx-grape

Usage

Install NVM + NPM

Install GraphViz and OboGraphViz

How it works

Acknowledgements

oakx-grape dependencies

FAQs

What is oakx-grape?

Is oakx-grape popular?

Is oakx-grape well maintained?

Is oakx-grape safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues