Package Health Score

87 / 100

security
No known security issues
popularity
Small
maintenance
Healthy
community
Active

Popularity

Small

GitHub Stars: 1.41K
Forks: 1K
Contributors: 270

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package galaxy-web-apps, we found that it has been starred 1,406 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Oct 29, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

AFL-3.0

Security Policy

Yes

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Maintenance

Healthy

Commit Frequency

Open Issues: 2.11K
Open PR: 263
Last Release: 24 days ago
Last Commit: 9 days ago

Further analysis of the maintenance status of galaxy-web-apps based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Healthy.

We found that galaxy-web-apps demonstrates a positive version release cadence with at least one new version released in the past 3 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Active

Readme: Yes
Contributing.md: Yes
Code of Conduct: Yes
Contributors: 270
Funding: No

A good and healthy external contribution signal for galaxy-web-apps project, which invites more than one hundred open source maintainers to collaborate on the repository.

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Package

Python Versions Compatibility: >=3.8

Age: 4 years
Latest Release: 24 days ago
Dependencies: 29 Direct
Versions: 19
Maintainers: 3
Wheels: OS Independent

Readme

Overview

The Galaxy web apps (Galaxy, Reports, Tool Shed).

Code:

History

24.1.3 (2024-10-25)

Bug fixes

Return generic message for password reset email by @ahmedhamidawan in #18479
Fix view parameter type in Job index API by @davelopez in #18521
Check if dataset has any data before running provider checks by @mvdbeek in #18526
Raise appropriate exception if ldda not found by @mvdbeek in #18569
Close install model session when request ends by @mvdbeek in #18629
Fix resume_paused_jobs if no session provided by @mvdbeek in #18640
Fix extract workflow from history when implicit collection has no jobs by @mvdbeek in #18661
Return error when following a link to a non-ready display application by @mvdbeek in #18672
Only load authnz routes when oidc enabled by @mvdbeek in #18683
File source and object store instance api fixes by @mvdbeek in #18685
Fix sorting users in admin by last login by @jdavcs in #18694
Fix resume paused jobs response handling by @dannon in #18733
Fix wrong extension on pick data output by @mvdbeek in #18798
Tighten TRS url check by @mvdbeek in #18841
Fix Workflow index bookmark filter by @itisAliRH in #18842
Extend on disk checks to running, queued and error states by @mvdbeek in #18846
Limit max number of items in dataproviders by @mvdbeek in #18881
Access tool data table filters in workflow building mode by @mvdbeek in #18900
Don't use async def where not appropriate by @mvdbeek in #18944

Enhancements

Make default_panel_view a _by_host option by @natefoo in #18471

Other changes

Fix check dataset check by @mvdbeek in #18856

24.1.2 (2024-09-25)

Bug fixes

Return generic message for password reset email by @ahmedhamidawan in #18479
Fix view parameter type in Job index API by @davelopez in #18521
Check if dataset has any data before running provider checks by @mvdbeek in #18526
Raise appropriate exception if ldda not found by @mvdbeek in #18569
Close install model session when request ends by @mvdbeek in #18629
Fix resume_paused_jobs if no session provided by @mvdbeek in #18640
Fix extract workflow from history when implicit collection has no jobs by @mvdbeek in #18661
Return error when following a link to a non-ready display application by @mvdbeek in #18672
Only load authnz routes when oidc enabled by @mvdbeek in #18683
File source and object store instance api fixes by @mvdbeek in #18685
Fix sorting users in admin by last login by @jdavcs in #18694
Fix resume paused jobs response handling by @dannon in #18733
Fix wrong extension on pick data output by @mvdbeek in #18798
Tighten TRS url check by @mvdbeek in #18841
Fix Workflow index bookmark filter by @itisAliRH in #18842
Extend on disk checks to running, queued and error states by @mvdbeek in #18846

Enhancements

Make default_panel_view a _by_host option by @natefoo in #18471

Other changes

Fix check dataset check by @mvdbeek in #18856

24.1.1 (2024-07-02)

Bug fixes

Fix permissions for temporary upload file for API uploads by @bernt-matthias in #17850
Dynamic tool fixes by @dcore94 in #18085
Revert some requests import changes by @nsoranzo in #18199
Small bug fixes for user data plugins by @jmchilton in #18246
Fix various packages' issues by @nsoranzo in #18301

Enhancements

Remove deprecated BCO export endpoint by @martenson in #16645
Implement a page object accessibility dialog by @jmchilton in #17225
Enable storage management by object store by @jmchilton in #17500
Type annotation and CWL-related improvements by @nsoranzo in #17630
Update Python dependencies by @galaxybot in #17653
Code cleanups from ruff and pyupgrade by @nsoranzo in #17654
SQLAlchemy 2.0 by @jdavcs in #17778
Add email notifications channel by @davelopez in #17914
Model typing and SA2.0 follow-up by @jdavcs in #17958
Drop unused workflow controller methods by @mvdbeek in #17974
Enable warn_unused_ignores mypy option by @nsoranzo in #17991
Add galaxy to user agent by @mvdbeek in #18003
Consolidate Visualization container, avoid using default iframe by @guerler in #18016
Add pagination support to Files Source plugins by @davelopez in #18059
Update Python dependencies by @galaxybot in #18063
Enable flake8-implicit-str-concat ruff rules by @nsoranzo in #18067
Change InvocationsList into a grid using GridList by @ahmedhamidawan in #18088
Empower users to bring their own storage and file sources by @jmchilton in #18127
Harden User Object Store and File Source Creation by @jmchilton in #18172
Drop restriction to switch to immutable histories by @davelopez in #18234
More structured indexing for user data objects. by @jmchilton in #18291
Allow running and editing workflows for specific versions by @ahmedhamidawan in #18378

Other changes

Fix typing issue in reused variable by @davelopez in #18344

24.0.3 (2024-06-28)

Bug fixes

do not expand datasets that are known to be inaccessible by @martenson in #17818
Raise exception if collection elements missing during download by @jdavcs in #18094
Allow purge query param, deprecate purge body param by @mvdbeek in #18105
Prevent anonymous and inactive users from running workflows by @ahmedhamidawan in #18192
Fix make all histories private with immutable histories by @davelopez in #18200
Fix pca 3d rendering of tabular files and visualization error handling in general by @mvdbeek in #18211
Check dataset state when attempting to acces dataset contents by @mvdbeek in #18214
Restrict job_files access to jobs that are not terminal by @mvdbeek in #18217
Raise appropriate exception if accessing deleted input file by @mvdbeek in #18223
Fix element serialization for collections that aren't populated yet by @mvdbeek in #18235
Skip new history creation if user is anonymous and login is required by @mvdbeek in #18319
Fix users API serialization when listing users by @davelopez in #18329
Fix authentication error for anonymous users querying jobs by @davelopez in #18333
Do not copy purged outputs to object store by @mvdbeek in #18342
Fix anonymous user job retrieval logic by @davelopez in #18358
Fix update group API payload model by @davelopez in #18374
Drop unnecessary escaping for workflow name and annotation by @mvdbeek in #18376

Other changes

Decrease log level for expected visualization errors by @mvdbeek in #18229

24.0.2 (2024-05-07)

Bug fixes

Adds logging of messageExceptions in the fastapi exception handler. by @dannon in #18041

24.0.1 (2024-05-02)

Bug fixes

Fix tool version switch in editor by @mvdbeek in #17858
Fix workflow run form failing on certain histories by @mvdbeek in #17869
Ensure that offset and limit are never negative by @mvdbeek in #18044
Fix history update time after bulk operation by @davelopez in #18068

Enhancements

Add middleware for logging start and end of request by @mvdbeek in #18046

24.0.0 (2024-04-02)

Bug fixes

tus wants a json response from v2.0.0 by @mira-miracoli in #17246
Fix quotas ID encoding by @davelopez in #17335
Fixes for flake8-bugbear 24.1.17 by @nsoranzo in #17340
Fix data_source and data_source_async bugs by @wm75 in #17422
Only check access permissions in /api/{history_dataset_collection_id}/contents/{dataset_collection_id} by @ahmedhamidawan in #17444
Associate default history with session when creating a new session by @mvdbeek in #17557
Fix tool shed webapp by @mvdbeek in #17597
Don't call get_or_create_default_history() twice for invalidated sessions by @nsoranzo in #17613
Fix tool panel workflow and favorites button bugs by @ahmedhamidawan in #17634
Fix DataResult type by @mvdbeek in #17639
Prevent 500 for anon /api/invocations by @mvdbeek in #17640
Don't fail for anon /api/users request by @mvdbeek in #17645
Limit new anon histories by @mvdbeek in #17657
Fix histories API index_query serialization by @davelopez in #17726
Handle missing indexer for a dataset by @ahmedhamidawan in #17736
Don't require history to calculate anon disk usage by @mvdbeek in #17765
Fix anon user values again by @mvdbeek in #17772
Fix new default history creation when in remote or single user mode by @dannon in #17796
Return published histories first in display_by_username_and_slug by @mvdbeek in #17808
Fix archived histories mixing with active in histories list by @davelopez in #17856

Enhancements

New Workflow List and Card View by @itisAliRH in #16607
port invocation API to fastapi by @martenson in #16707
Python 3.8 as minimum by @mr-c in #16954
Support for OIDC API Auth and OIDC integration tests by @nuwang in #16977
Toward declarative help for Galaxy markdown directives. by @jmchilton in #16979
Vueify Admin User Grid by @guerler in #17030
Remove web framework dependency from tools by @davelopez in #17058
Vueify Admin Roles Grid by @guerler in #17118
SA2.0 updates: handling "object is being merged into a Session along the backref cascade path" by @jdavcs in #17122
Vueify Admin Groups Grid by @guerler in #17126
Towards SQLAlchemy 2.0: fix last cases of RemovedIn20Warning by @jdavcs in #17132
Vueify Admin Forms and Quota grids by @guerler in #17141
Migrate dataset extra files store to Pinia by @davelopez in #17145
Create pydantic model for the return of show operation - get: /api/jobs/{job_id} by @heisner-tillman in #17153
Remove legacy tool versions list from admin panel by @guerler in #17155
Don't require admin user to list /api/tool_data by @jozh2008 in #17161
Drop fastapi-utils.InferringRouter in favor of fastapi.APIRouter by @jdavcs in #17184
Vendorize fastapi-utls.cbv by @jdavcs in #17205
Vueifiy History Grids by @guerler in #17219
Update Python dependencies by @galaxybot in #17235
Refactor two of the missing invocation routes to FastAPI by @heisner-tillman in #17237
Allow job files to consume TUS uploads by @jmchilton in #17242
Migrate models to pydantic 2 by @mvdbeek in #17262
Adds delete, purge and undelete batch operations to History Grid by @guerler in #17282
Fix any type for tool_data_file_path by @mvdbeek in #17293
API endpoint that allows "changing" the objectstore for "safe" scenarios. by @jmchilton in #17329
Update Python dependencies by @galaxybot in #17333
Combines legacy qv-pattern and advanced filter pattern in history index endpoint by @guerler in #17368
Update to black 2024 stable style by @nsoranzo in #17391
Replaces Trackster Grids with Data Dialog, Removes Phyloviz, Circster and Sweepster by @guerler in #17415
Removes outdated Grid controller and backbone modules by @guerler in #17434
Allow using tool data bundles as inputs to reference data select parameters by @mvdbeek in #17435
Modernize bits and pieces of storage display by @jmchilton in #17436
UI for "relocating" a dataset to a new object store (when safe) by @jmchilton in #17437
Refactor Workflow API routes - Part 1 by @heisner-tillman in #17463
Consolidate resource grids into tab views by @guerler in #17487
Display workflow invocation counts. by @jmchilton in #17488
Removes legacy history xml makos by @guerler in #17505
add encode ID API endpoint by @mira-miracoli in #17510
Fixing data_source tools and incrementing tool profile by @wm75 in #17515
Filter out subworkflow invocations by @mvdbeek in #17558
Links to individual invocations. by @jmchilton in #17566
Restore histories API behavior for keys query parameter by @davelopez in #17779
Fix datasets API custom keys encoding by @davelopez in #17793

23.2.1 (2024-02-21)

Bug fixes

Rename to_dict to populate in FormDefintion to fix bug by @jdavcs in #16553
Fix: serialize tool_shed_urls directly from the API by @davelopez in #16561
chore: fix typos by @afuetterer in #16851
Restore ToolsApi and create new api route for new panel structure by @ahmedhamidawan in #16872
Ruff and flake8 fixes by @nsoranzo in #16884
Make payload optional again for create tag API by @nsoranzo in #17144
Fix Display Application link generation by @mvdbeek in #17227
Display application fixes and tests by @mvdbeek in #17233
Respect upstream_gzip setting when streaming dataset collection archive by @mvdbeek in #17400
Fix history bulk operations menu conditions by @davelopez in #17433
Only check access permissions in /api/{history_dataset_collection_id}/contents/{dataset_collection_id} by @mvdbeek in #17459
Set metadata states on dataset association, not dataset by @mvdbeek in #17474
Provide working routes.url_for every ASGI request by @mvdbeek in #17497

Enhancements

Tool Shed 2.0 by @jmchilton in #15639
Limit number of celery task executions per second per user by @claudiofr in #16232
Delete non-terminal jobs and subworkflow invocations when cancelling invocation by @mvdbeek in #16252
Towards SQLAlchemy 2.0 (upgrades to SA Core usage) by @jdavcs in #16264
Notifications admin panel by @itisAliRH in #16278
Migrate cloud API to Fast API by @heisner-tillman in #16296
Drop (admin only) userskeys controller by @dannon in #16318
Migrate a part of the users API to Fast API by @heisner-tillman in #16341
Add Invenio RDM repository integration by @davelopez in #16381
Refactor FilesDialog + Remote Files API schema improvements by @davelopez in #16420
SQLAlchemy 2.0 upgrades to ORM usage in /lib by @jdavcs in #16434
Update Python dependencies by @galaxybot in #16436
Published Workflow Sharing Page Overhaul by @ElectronicBlueberry in #16510
Tweak tool memory use and optimize shared memory when using preload by @mvdbeek in #16536
Update Python dependencies by @galaxybot in #16577
Workflow Comments 💬 by @ElectronicBlueberry in #16612
Galaxy Markdown - add workflow image and license to Galaxy markdown. by @jmchilton in #16672
Implement instance URLs in Galaxy markdown. by @jmchilton in #16675
Enhance task monitor composable by @davelopez in #16695
SQLAlchemy 2.0 upgrades (part 2) by @jdavcs in #16724
Migrate collection elements store to Pinia by @davelopez in #16725
Refactor Tool Panel views structures and combine ToolBox and ToolBoxWorkflow into one component by @ahmedhamidawan in #16739
Don't copy collection elements in test_dataset_collection_hide_originals by @nsoranzo in #16747
Drop legacy server-side search by @jdavcs in #16755
Migrate a part of the jobs API to Fast API by @heisner-tillman in #16778
Replace file_name property with get_file_name function by @SergeyYakubov in #16783
Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by @sveinugu in #16795
Galaxy help forum integration by @ElectronicBlueberry in #16798
SQLAlchemy 2.0 upgrades (part 4) by @jdavcs in #16852
Vueify Visualizations Grid by @guerler in #16892
Change api/tool_panel to api/tool_panels/... by @ahmedhamidawan in #16928
Remove "Create Workflow" form and allow workflow creation in editor by @ahmedhamidawan in #16938
Update API tool_panels route conditions by @dannon in #16991
Fix invocation report to target correct workflow version. by @jmchilton in #17008
Upgrade job manager's index_query method to SA2.0 by @jdavcs in #17020
Require name for workflows on save, set default to Unnamed Workflow by @ahmedhamidawan in #17038
Migrate groups API to fastAPI by @arash77 in #17051
Migrate ItemTags API to FastAPI by @arash77 in #17064

Other changes

Merge 23.1 into dev by @mvdbeek in #16534
Fix succces typo by @mvdbeek in #17481

23.1.4 (2024-01-04)

Bug fixes

Properly clear session on OIDC logout by @guerler in #17120

23.1.3 (2023-12-01)

Bug fixes

Add missing optional description field, fixes ephemeris data library example by @mvdbeek in #17116

23.1.2 (2023-11-29)

Bug fixes

Provide error message instead of internal server error by @mvdbeek in #16905
Fix input dates in notifications: consider timezone offset by @davelopez in #17088

Enhancements

Add HEAD route to job_files endpoint by @mvdbeek in #17072

23.1.1 (2023-10-23)

Bug fixes

Create ToolSuccess route and refactor component by @ahmedhamidawan in #15484
fix premature return in user API by @martenson in #15781
Ensure session is request-scoped for legacy endpoints by @jdavcs in #16207
allow anon access for api/datasets/get_content_as_text by @martenson in #16226
Fix form builder value handling by @guerler in #16304
Fix tags ownership by @davelopez in #16339
Fix histories count by @davelopez in #16400
Make datatype edit default value a string instead of list of strings by @mvdbeek in #16591
Backport tool mem fixes by @mvdbeek in #16601
Optimize getting current user session by @mvdbeek in #16604
Drop RecursiveMiddleware by @mvdbeek in #16605
List extra files only for terminal datasets by @mvdbeek in #16705
Copy the collection contents by default when copying a collection by @mvdbeek in #16717
Fix up local tool version handling by @mvdbeek in #16836
Fix delete collection + elements by @davelopez in #16879

Enhancements

Empower Users to Select Storage Destination by @jmchilton in #14073
Add Storage Dashboard visualizations for histories by @davelopez in #14820
External Login Flow: Redirect users if account already exists by @ahmedhamidawan in #15019
Various Tool Shed Cleanup by @jmchilton in #15247
Add Storage Management API by @davelopez in #15295
OIDC tokens by @SergeyYakubov in #15300
Add support for visualizing HDF5 datasets. by @jarrah42 in #15394
Towards SQLAlchemy 2.0: drop session autocommit setting by @jdavcs in #15421
Update Python dependencies by @galaxybot in #15435
Unify url handling with filesources by @nuwang in #15497
Explore tool remote test data by @davelopez in #15510
Update Python dependencies by @galaxybot in #15564
Drop workflow exports to myexperiment.org by @dannon in #15576
Add Galaxy Notification System by @davelopez in #15663
Mention OpenAPI docs in Galaxy API Documentation by @bernt-matthias in #15713
Fix/Enhance recalculate disk usage API endpoint by @davelopez in #15739
Update Python dependencies by @galaxybot in #15890
Add History Archival feature by @davelopez in #16003
Code cleanups from ruff and pyupgrade by @nsoranzo in #16035
Dataset chunking tests (and small fixes) by @jmchilton in #16069
Paginate History Store by @ahmedhamidawan in #16084
Allow HEAD request for requesting metadata files by @martenson in #16113
Add option to see invocations related to a history by @martenson in #16136
Improve histories and datasets immutability checks by @davelopez in #16143
Migrate display applications API to Fast API by @heisner-tillman in #16156
adjust grid sharing indicators by @martenson in #16163
Remove various fallback behaviors by @mvdbeek in #16199
bring grids for (published) pages on par with workflows by @martenson in #16209
Small test decorator improvements. by @jmchilton in #16220
Don't error on missing parameters or unused parameters in UI controllers by @mvdbeek in #16246
Update Python dependencies by @galaxybot in #16267
Fix Storage Dashboard missing archived histories by @davelopez in #16473
Add missing archived filter in saved histories by @davelopez in #16475
Drop expunge_all() call in WebTransactionRequest by @mvdbeek in #16606

Other changes

Follow up on object store selection PR. by @jmchilton in #15654
Tweaks to new object store and quota APIs by @jmchilton in #15709
Fix Enums in API docs by @davelopez in #15740
Quota source labelling bug fixes and improvements by @jmchilton in #15795
merge release_23.0 into dev by @martenson in #15830
merge release_23.0 into dev by @martenson in #15854
Merge 23.0 into dev by @nsoranzo in #15902
Fix recalculate_quota throug kombu message by @mvdbeek in #16299

23.0.6 (2023-10-23)

Bug fixes

Fix incorrect ASGI request host by @davelopez in #16574
Allow the legacy DELETE dataset endpoint to accept any string for the history_id by @assuntad23 in #16593

23.0.5 (2023-07-29)

Bug fixes

Fix active step display in workflow editor side panel by @mvdbeek in #16364

23.0.4 (2023-06-30)

Bug fixes

Fix folder access for anonymous user by @mvdbeek in #16330

23.0.3 (2023-06-26)

Bug fixes

Fix converting Enum value to str for Python 3.11 by @nsoranzo in #16284

Enhancements

When importing tool data bundles, use the first loc file for the matching table by @natefoo in #16247

23.0.2 (2023-06-13)

No recorded changes since last release

23.0.1 (2023-06-08)

Bug fixes

Display DCE in job parameter component, allow rerunning with DCE input by @mvdbeek in #15744
Various fixes to path prefix handling by @mvdbeek in #16033
Fix dataype_change not updating HDCA update_time by @mvdbeek in #16099
Ignore invalid query params in display_by_username_and_slug by @mvdbeek in #16117

20.5.0 (2020-07-04)

First release from the 20.05 branch of Galaxy.

FAQs

What is galaxy-web-apps?

Galaxy web apps. Visit Snyk Advisor to see a full health score report for galaxy-web-apps, including popularity, security, maintenance & community analysis.

Is galaxy-web-apps popular?

The python package galaxy-web-apps receives a total of 311 weekly downloads. As such, galaxy-web-apps popularity was classified as small. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is galaxy-web-apps well maintained?

We found that galaxy-web-apps demonstrated a healthy version release cadence and project activity. It has a community of 270 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is galaxy-web-apps safe to use?

The python package galaxy-web-apps was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 13 November-2024, at 16:45 (UTC).

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Readme

Overview

History

24.1.3 (2024-10-25)

Bug fixes

Enhancements

Other changes

24.1.2 (2024-09-25)

Bug fixes

Enhancements

Other changes

24.1.1 (2024-07-02)

Bug fixes

Enhancements

Other changes

24.0.3 (2024-06-28)

Bug fixes

Other changes

24.0.2 (2024-05-07)

Bug fixes

24.0.1 (2024-05-02)

Bug fixes

Enhancements

24.0.0 (2024-04-02)

Bug fixes

Enhancements

23.2.1 (2024-02-21)

Bug fixes

Enhancements

Other changes

23.1.4 (2024-01-04)

Bug fixes

23.1.3 (2023-12-01)

Bug fixes

23.1.2 (2023-11-29)

Bug fixes

Enhancements

23.1.1 (2023-10-23)

Bug fixes

Enhancements

Other changes

23.0.6 (2023-10-23)

Bug fixes

23.0.5 (2023-07-29)

Bug fixes

23.0.4 (2023-06-30)

Bug fixes

23.0.3 (2023-06-26)

Bug fixes

Enhancements

23.0.2 (2023-06-13)

23.0.1 (2023-06-08)

Bug fixes

20.5.0 (2020-07-04)

galaxy-web-apps dependencies

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Is galaxy-web-apps well maintained?

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Source Code

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