View CellProfiler on Snyk Open Source Advisor

Package Health Score

84 / 100

security
No known security issues
popularity
Small
maintenance
Healthy
community
Active

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Popularity

Small

GitHub Stars: 923
Forks: 377
Contributors: 80

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package CellProfiler, we found that it has been starred 923 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Sep 16, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

BSD-2-Clause

Security Policy

We found a way for you to contribute to the project! Looks like CellProfiler is missing a security policy.

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Maintenance

Healthy

Commit Frequency

Open Issues: 300
Open PR: 14
Last Release: 2 months ago
Last Commit: 22 days ago

Further analysis of the maintenance status of CellProfiler based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Healthy.

We found that CellProfiler demonstrates a positive version release cadence with at least one new version released in the past 3 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Active

Readme: No
Contributing.md: Yes
Code of Conduct: Yes
Contributors: 80
Funding: No

With more than 10 contributors for the CellProfiler repository, this is possibly a sign for a growing and inviting community.

How about a good first contribution to this project? It seems that CellProfiler is missing a README file.

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Package

Python Versions Compatibility: >=3.8

Age: 4 years
Latest Release: 2 months ago
Dependencies: 1 Direct
Versions: 21
Maintainers: 6
Wheels: OS Independent

Not sure how to use CellProfiler?

To help you get started, we've collected the most common ways that CellProfiler is being used within popular public projects.

CellProfiler / CellProfiler / tests / modules / test_loadsingleimage.py View on Github

pipeline = cellprofiler.pipeline.Pipeline()
        lsi = cellprofiler.modules.loadsingleimage.LoadSingleImage()
        lsi.set_module_num(1)
        lsi.directory.dir_choice = cellprofiler.setting.ABSOLUTE_FOLDER_NAME
        lsi.directory.custom_path = path
        lsi.file_settings[0].image_name.value = get_image_name(0)
        lsi.file_settings[0].file_name.value = filename
        pipeline.add_module(lsi)
        li = cellprofiler.modules.loadimages.LoadImages()
        li.set_module_num(2)
        pipeline.add_module(li)
        li.match_method.value = cellprofiler.modules.loadimages.MS_EXACT_MATCH
        li.location.dir_choice = cellprofiler.setting.ABSOLUTE_FOLDER_NAME
        li.location.custom_path = path
        li.images[0].common_text.value = "Channel2-"
        m = cellprofiler.measurement.Measurements()
        workspace = cellprofiler.workspace.Workspace(
            pipeline,
            lsi,
            m,
            cellprofiler.object.ObjectSet(),
            m,
            cellprofiler.image.ImageSetList(),
        )
        assert pipeline.prepare_run(workspace)
        assert m.image_set_count > 1
        pipeline.prepare_group(workspace, {}, m.get_image_numbers())
        #
        # Skip to the second image set
        #
        m.next_image_set(2)
        lsi.run(workspace)

View more ways to use CellProfiler

CellProfiler dependencies

six

FAQs

What is CellProfiler?

. Visit Snyk Advisor to see a full health score report for CellProfiler, including popularity, security, maintenance & community analysis.

Is CellProfiler popular?

The python package CellProfiler receives a total of 690 weekly downloads. As such, CellProfiler popularity was classified as small. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is CellProfiler well maintained?

We found that CellProfiler demonstrated a healthy version release cadence and project activity. It has a community of 80 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is CellProfiler safe to use?

The python package CellProfiler was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 25 November-2024, at 21:49 (UTC).

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CellProfiler

null For more information about how to use this package see README

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Popularity

Direct Usage Popularity

Security

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Community

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Package

Not sure how to use CellProfiler?

CellProfiler dependencies

FAQs

What is CellProfiler?

Is CellProfiler popular?

Is CellProfiler well maintained?

Is CellProfiler safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Explore Similar Packages

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Not sure how to use CellProfiler?

CellProfiler dependencies

FAQs

What is CellProfiler?

Is CellProfiler popular?

Is CellProfiler well maintained?

Is CellProfiler safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues