How to use the brainspace.plotting.defaults_plotting function in brainspace

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github MICA-MNI / BrainSpace / brainspace / plotting / surface_plotting.py View on Github external
def _add_colorbar(ren, lut, location):

    orientation = 'horizontal'
    if location in ['left', 'right']:
        orientation = 'vertical'

    text_pos = 'succeedScalarBar'
    if location in ['left', 'bottom']:
        text_pos = 'precedeScalarBar'

    kwbs = dp.scalarBarActor_kwds.copy()
    kwbs.update({'lookuptable': lut, 'orientation': orientation,
                 'textPosition': text_pos})
    return ren.AddScalarBarActor(**kwbs)
github MICA-MNI / BrainSpace / brainspace / plotting / surface_plotting.py View on Github external
actor = dp.actor_kwds.copy()
            actor.update({k: v[i, j][ia] for k, v in actor_kwds.items()})
            if view[i, j] is not None:
                actor['orientation'] = orientations[view[i, j]]

            # Mapper
            mapper = dp.mapper_kwds.copy()
            mapper['scalarVisibility'] = name is not True
            mapper['interpolateScalarsBeforeMapping'] = not sp['disc']
            mapper.update({k: v[i, j][ia] for k, v in mapper_kwds.items()})
            mapper['inputDataObject'] = s
            if name is not True:
                mapper['arrayName'] = name

            # Lut
            lut = dp.lookuptable_kwds.copy()
            lut['numberOfTableValues'] = sp['nval']
            lut['range'] = (sp['min'], sp['max'])

            cm = cmap[i, j][ia]
            if cm is not None:
                if cm in colormaps:
                    table = colormaps[cm]
                else:
                    cm = plt.get_cmap(cm)
                    nvals = lut['numberOfTableValues']
                    table = cm(np.linspace(0, 1, nvals)) * 255
                    table = table.astype(np.uint8)

                lut['table'] = table
            if nan_color:
                lut['nanColor'] = nan_color
github MICA-MNI / BrainSpace / brainspace / plotting / surface_plotting.py View on Github external
def _add_text(ren, text, location):
    orientation = 0
    if location == 'left':
        orientation = 90
    elif location == 'right':
        orientation = -90

    kwds = dp.textActor_kwds.copy()
    kwds.update({'input': text, 'orientation': orientation})
    return ren.AddTextActor(**kwds)
github MICA-MNI / BrainSpace / brainspace / plotting / surface_plotting.py View on Github external
if sp['disc']:
                lut['IndexedLookup'] = True
                color_idx = sp['val']
                lut['annotations'] = (color_idx, color_idx.astype(str))
            mapper['lookuptable'] = lut

            ren.AddActor(**actor, mapper=mapper)

        ren.ResetCamera()
        ren.activeCamera.parallelProjection = True
        ren.activeCamera.Zoom(zoom[i, j])

    # Plot renderers for color bar, text
    for e in entries:
        kwds = dp.renderer_kwds.copy()
        kwds.update({'row': e.row, 'col': e.col, 'background': background})
        ren1 = p.AddRenderer(**kwds)
        if isinstance(e.label, str):
            _add_text(ren1, e.label, e.loc)
        else:  # color bar
            ren_lut = p.renderers[p.populated[e.label]][-1]
            lut = ren_lut.actors.lastActor.mapper.lookupTable
            _add_colorbar(ren1, lut.VTKObject, e.loc)

    return p
github MICA-MNI / BrainSpace / brainspace / plotting / surface_plotting.py View on Github external
kwds.update({k: v[i, j] for k, v in ren_kwds.items()})
        kwds['background'] = background  # just in case
        ren = p.AddRenderer(**kwds)

        if layout[i, j] is None:
            continue

        s = surfs[layout[i, j]]
        for ia, name in enumerate(array_name[i, j]):
            if name is False or name is None:
                continue

            sp = specs[ia, i, j]

            # Actor
            actor = dp.actor_kwds.copy()
            actor.update({k: v[i, j][ia] for k, v in actor_kwds.items()})
            if view[i, j] is not None:
                actor['orientation'] = orientations[view[i, j]]

            # Mapper
            mapper = dp.mapper_kwds.copy()
            mapper['scalarVisibility'] = name is not True
            mapper['interpolateScalarsBeforeMapping'] = not sp['disc']
            mapper.update({k: v[i, j][ia] for k, v in mapper_kwds.items()})
            mapper['inputDataObject'] = s
            if name is not True:
                mapper['arrayName'] = name

            # Lut
            lut = dp.lookuptable_kwds.copy()
            lut['numberOfTableValues'] = sp['nval']
github MICA-MNI / BrainSpace / brainspace / plotting / surface_plotting.py View on Github external
s = surfs[layout[i, j]]
        for ia, name in enumerate(array_name[i, j]):
            if name is False or name is None:
                continue

            sp = specs[ia, i, j]

            # Actor
            actor = dp.actor_kwds.copy()
            actor.update({k: v[i, j][ia] for k, v in actor_kwds.items()})
            if view[i, j] is not None:
                actor['orientation'] = orientations[view[i, j]]

            # Mapper
            mapper = dp.mapper_kwds.copy()
            mapper['scalarVisibility'] = name is not True
            mapper['interpolateScalarsBeforeMapping'] = not sp['disc']
            mapper.update({k: v[i, j][ia] for k, v in mapper_kwds.items()})
            mapper['inputDataObject'] = s
            if name is not True:
                mapper['arrayName'] = name

            # Lut
            lut = dp.lookuptable_kwds.copy()
            lut['numberOfTableValues'] = sp['nval']
            lut['range'] = (sp['min'], sp['max'])

            cm = cmap[i, j][ia]
            if cm is not None:
                if cm in colormaps:
                    table = colormaps[cm]
github MICA-MNI / BrainSpace / brainspace / plotting / surface_plotting.py View on Github external
label_text = {'left': label_text}

    # Array ranges
    specs = _get_ranges(layout, surfs, array_name, share, color_range)

    # Grid
    grid_row, grid_col, ridx, cidx, entries = \
        _gen_grid(nrow, ncol, label_text, color_bar, share)

    kwargs.update({'nrow': grid_row, 'ncol': grid_col, 'size': size})
    p = Plotter(**kwargs)

    for iren, jren in iter_prod(range(len(ridx)), range(len(cidx))):
        i, j = ridx[iren], cidx[jren]

        kwds = dp.renderer_kwds.copy()
        kwds.update({'row': iren, 'col': jren, 'background': background})

        # Renderers for empty entries
        if isinstance(i, str) or isinstance(j, str):
            if isinstance(i, str) and isinstance(j, str):
                p.AddRenderer(**kwds)
            continue

        kwds.update({k: v[i, j] for k, v in ren_kwds.items()})
        kwds['background'] = background  # just in case
        ren = p.AddRenderer(**kwds)

        if layout[i, j] is None:
            continue

        s = surfs[layout[i, j]]