black-pdbfixer

v1.9.0

Fork of pdbfixer (https://github.com/openmm/pdbfixer) to be able to pip install it. For more information about how to use this package see README

Latest version published 20 days ago

License: Unrecognized

PyPI

GitHub

Package Health Score

72 / 100

security
No known security issues
popularity
Limited
maintenance
Healthy
community
Sustainable

Popularity

Limited

GitHub Stars: 494
Forks: 116
Contributors: 30

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package black-pdbfixer, we found that it has been starred 494 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Nov 2, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

Unrecognized

Security Policy

We found a way for you to contribute to the project! Looks like black-pdbfixer is missing a security policy.

You can connect your project's repository to Snyk to stay up to date on security alerts and receive automatic fix pull requests.

Keep your project free of vulnerabilities with Snyk

Maintenance

Healthy

Commit Frequency

Open Issues: 45
Open PR: 2
Last Release: 20 days ago
Last Commit: 14 days ago

Further analysis of the maintenance status of black-pdbfixer based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Healthy.

We found that black-pdbfixer demonstrates a positive version release cadence with at least one new version released in the past 3 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Sustainable

Readme: Yes
Contributing.md: No
Code of Conduct: No
Contributors: 30
Funding: No

With more than 10 contributors for the black-pdbfixer repository, this is possibly a sign for a growing and inviting community.

We found a way for you to contribute to the project! Looks like black-pdbfixer is missing a Code of Conduct.

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Ensure all the packages you're using are healthy and well-maintained

Snyk Vulnerability Scanner

Get health score & security insights directly in your IDE

Package

Python Versions Compatibility: >=3.8

Age: 20 days
Latest Release: 20 days ago
Dependencies: 0 Direct
Versions: 1
Maintainers: 1
Wheels: OS Independent

Readme

Attention it is just a fork to be able to pip install it

Good

PDBFixer

PDBFixer is an easy to use application for fixing problems in Protein Data Bank files in preparation for simulating them. It can automatically fix the following problems:

Add missing heavy atoms.
Add missing hydrogen atoms.
Build missing loops.
Convert non-standard residues to their standard equivalents.
Select a single position for atoms with multiple alternate positions listed.
Delete unwanted chains from the model.
Delete unwanted heterogens.
Build a water box for explicit solvent simulations.

See our manual

Installation

PDBFixer can be installed with conda or mamba.

conda install -c conda-forge pdbfixer

Alternatively you can install from source, as described in the manual.

FAQs

What is black-pdbfixer?

Fork of pdbfixer (https://github.com/openmm/pdbfixer) to be able to pip install it. Visit Snyk Advisor to see a full health score report for black-pdbfixer, including popularity, security, maintenance & community analysis.

Is black-pdbfixer popular?

We’re still processing downloads data for the python package black-pdbfixer. Visit the popularity section on Snyk Advisor to see the full popularity analysis.

Is black-pdbfixer well maintained?

We found that black-pdbfixer demonstrated a healthy version release cadence and project activity. It has a community of 30 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is black-pdbfixer safe to use?

The python package black-pdbfixer was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 21 November-2024, at 08:55 (UTC).

Build a secure application checklist

Select a recommended open source package

Minimize your risk by selecting secure & well maintained open source packages

DONE

Scan your app for vulnerabilities

Scan your application to find vulnerabilities in your: source code, open source dependencies, containers and configuration files

SCAN NOW

Fix identified vulnerabilities

Easily fix your code by leveraging automatically generated PRs

AUTO FIX

Monitor for new issues

New vulnerabilities are discovered every day. Get notified if your application is affected

MONITOR APP