View ParmEd on Snyk Open Source Advisor

Package Health Score

73 / 100

security
No known security issues
popularity
Small
maintenance
Healthy
community
Sustainable

Explore Similar Packages

Popularity

Small

GitHub Stars: 401
Forks: 149
Contributors: 60

Direct Usage Popularity

Based on project statistics from the GitHub repository for the PyPI package ParmEd, we found that it has been starred 401 times.

Security

No known security issues

Security and license risk for latest version

Release Date: Oct 30, 2024
Direct Vulnerabilities: 0
C
0
H
0
M
0
L
Indirect Vulnerabilities: 0
C
0
H
0
M
0
L
License Risk: 0
H
0
M
0
L

All security vulnerabilities belong to production dependencies of direct and indirect packages.

License

LGPL-3.0

Non-Permissive License

We noticed that this project uses a license which requires less permissive conditions such as disclosing the source code, stating changes or redistributing the source under the same license. It is advised to further consult the license terms before use.

Security Policy

We found a way for you to contribute to the project! Looks like ParmEd is missing a security policy.

You can connect your project's repository to Snyk to stay up to date on security alerts and receive automatic fix pull requests.

Keep your project free of vulnerabilities with Snyk

Maintenance

Healthy

Commit Frequency

Open Issues: 166
Open PR: 12
Last Release: 2 months ago
Last Commit: 3 months ago

Further analysis of the maintenance status of ParmEd based on released PyPI versions cadence, the repository activity, and other data points determined that its maintenance is Healthy.

We found that ParmEd demonstrates a positive version release cadence with at least one new version released in the past 3 months.

As a healthy sign for on-going project maintenance, we found that the GitHub repository had at least 1 pull request or issue interacted with by the community.

Community

Sustainable

Readme: No
Contributing.md: No
Code of Conduct: No
Contributors: 60
Funding: No

With more than 10 contributors for the ParmEd repository, this is possibly a sign for a growing and inviting community.

We found a way for you to contribute to the project! Looks like ParmEd is missing a Code of Conduct.

How about a good first contribution to this project? It seems that ParmEd is missing a README file.

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Ensure all the packages you're using are healthy and well-maintained

Snyk Vulnerability Scanner

Get health score & security insights directly in your IDE

Package

Python Versions Compatibility: >=3.8

Age: 9 years
Latest Release: 2 months ago
Dependencies: N/A
Versions: 17
Maintainers: 1
Wheels: No

Not sure how to use ParmEd?

To help you get started, we've collected the most common ways that ParmEd is being used within popular public projects.

slochower / pAPRika / test / test_efficiency.py View on Github

import parmed as pmd
import numpy as np
import logging as log

from paprika import restraints
from paprika import analysis

logger = log.getLogger()
logger.setLevel(log.DEBUG)
log.basicConfig(format="%(asctime)s %(message)s", datefmt="%Y-%m-%d %I:%M:%S %p")

inputpdb = pmd.load_file("cb6_but_gb_apr_ref_data/vac.pdb")

# Distance restraint
rest1 = restraints.DAT_restraint()
rest1.continuous_apr = True
rest1.amber_index = True
rest1.topology = inputpdb
rest1.mask1 = ":CB6@O"
rest1.mask2 = ":BUT@C1"
rest1.attach["target"] = 4.5
rest1.attach["fraction_list"] = [0.00, 0.04, 0.181, 0.496, 1.000]
rest1.attach["fc_final"] = 5.0
rest1.pull["fc"] = rest1.attach["fc_final"]
rest1.pull["target_initial"] = rest1.attach["target"]
rest1.pull["target_final"] = 18.5
rest1.pull["num_windows"] = 19
rest1.initialize()

View more ways to use ParmEd

FAQs

What is ParmEd?

Inter-package toolkit for molecular mechanical simulations. Visit Snyk Advisor to see a full health score report for ParmEd, including popularity, security, maintenance & community analysis.

Is ParmEd popular?

The python package ParmEd receives a total of 3,149 weekly downloads. As such, ParmEd popularity was classified as small. Visit the popularity section on Snyk Advisor to see the full health analysis.

Is ParmEd well maintained?

We found that ParmEd demonstrated a healthy version release cadence and project activity. It has a community of 60 open source contributors collaborating on the project. See the full package health analysis to learn more about the package maintenance status.

Is ParmEd safe to use?

The python package ParmEd was scanned for known vulnerabilities and missing license, and no issues were found. Thus the package was deemed as safe to use. See the full health analysis review.

Last updated on 24 December-2024, at 21:36 (UTC).

Build a secure application checklist

Select a recommended open source package

Minimize your risk by selecting secure & well maintained open source packages

DONE

Scan your app for vulnerabilities

Scan your application to find vulnerabilities in your: source code, open source dependencies, containers and configuration files

SCAN NOW

Fix identified vulnerabilities

Easily fix your code by leveraging automatically generated PRs

AUTO FIX

Monitor for new issues

New vulnerabilities are discovered every day. Get notified if your application is affected

MONITOR APP

ParmEd

Inter-package toolkit for molecular mechanical simulations For more information about how to use this package see README

Ensure you're using the healthiest python packages

Package Health Score

Explore Similar Packages

Popularity

Direct Usage Popularity

Security

Security and license risk for latest version

Non-Permissive License

Maintenance

Commit Frequency

Community

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Package

Not sure how to use ParmEd?

FAQs

What is ParmEd?

Is ParmEd popular?

Is ParmEd well maintained?

Is ParmEd safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Fix identified vulnerabilities

Monitor for new issues

Package Health Score

Explore Similar Packages

Direct Usage Popularity

Security and license risk for latest version

Commit Frequency

Embed Package Health Score Badge

Keep your project healthy

Check your requirements.txt

Snyk Vulnerability Scanner

Not sure how to use ParmEd?

FAQs

What is ParmEd?

Is ParmEd popular?

Is ParmEd well maintained?

Is ParmEd safe to use?

Build a secure application checklist

Select a recommended open source package

Scan your app for vulnerabilities

Source Code

Open Source

Container

Config

Fix identified vulnerabilities

Monitor for new issues